Scalable interactive framework for single-cell RNA sequencing data analysis.
Cytosplore Viewer
Interactive visual analysis system for the exploration of single cell data.
FLAMES
Framework for prediction of effector genes in genetic loci for complex traits.
FUMA
Platform for functional mapping and annotation of GWAS studies.
ManiVault
Visual analytics framework for high-dimensional data.
scAGG
Sample-level embedding and classification of AD from single-nucleus data.
scTopoGAN
Method to perform unsupervised manifold alignment of single-cell data.
Space Walker
Visual analytics tool for gradient exploration of spatial transcriptomics data.
Sparser single-cell RNA-Seq
Software code to analyze binary-based single cell gene expression data.
TACTiCS
Software model to transfer and align cell types in cross-species analysis.
treeArches
Framework to create and extend a cell-type reference atlas and hierarchies.
3D microscopy imaging data healthy and AD adult human midbrain
Creator: Anna van Regteren Altena (UMC Utrecht)
Behavioural data accompanying alcohol ensemble proteomics
Creator: Pelle Wilbers (VU Amsterdam)
bulk RNA sequencing dataset of SN cell bodies versus dendrites
Creator: Oxana Garritsen (UMC Utrecht)
Cell type-specific gene rankings for Alzheimer’s Disease by scAGG
Creator: Timo Verlaan (TU Delft)
GWAS Summary Statistics
Creator: CNCR-CTG lab (VU Amsterdam)
MRI macroscale functional connectivity GWAS
Creator: Bernardo Maciel (VU Amsterdam)
PGC AD working group third wave summary statistics (pgc-alz3)
Creator: Douglas Wightman (VU Amsterdam)
scRNA-seq data of developing microglia from substantia nigra
Creator: Oxana Garritsen (UMC Utrecht)
snRNA-seq data of the healthy adult human VTA
Creator: Anna van Regteren Altena (UMC Utrecht)
Synaptic signatures of engram ensembles
Creators: Biswajit Moharana, Renee Pullen and Janina Kupke (VU Amsterdam)